Protein Info for ABZR86_RS13860 in Dyella japonica UNC79MFTsu3.2

Annotation: Sua5/YciO/YrdC/YwlC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF01300: Sua5_yciO_yrdC" amino acids 16 to 188 (173 residues), 145.7 bits, see alignment E=5.5e-47

Best Hits

Swiss-Prot: 54% identical to TSAC_HALHL: Threonylcarbamoyl-AMP synthase (tsaC) from Halorhodospira halophila (strain DSM 244 / SL1)

KEGG orthology group: K07566, putative translation factor (inferred from 51% identity to xal:XALc_2865)

Predicted SEED Role

"TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2EFJ3 at UniProt or InterPro

Protein Sequence (190 amino acids)

>ABZR86_RS13860 Sua5/YciO/YrdC/YwlC family protein (Dyella japonica UNC79MFTsu3.2)
MTRRFTPDELQDAAALLRGGGVLAYPTEAVYGLGCDPHDRLAFERIFALKQRPPTQGVLL
IGADFAQVERYIDRSAVPAEVMAQVRASWPGPNTWIFPRSAEVPDWVAGAHAGIALRVTA
HEPAAALCRAWGGALVSTSANPHGQPPARSAMEVEAYFGAALEGVLDAPLGGQERPTVIR
DALTGVIIRA