Protein Info for ABZR86_RS13635 in Dyella japonica UNC79MFTsu3.2

Annotation: F0F1 ATP synthase subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 277 transmembrane" amino acids 33 to 53 (21 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 118 to 131 (14 residues), see Phobius details amino acids 134 to 134 (1 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details TIGR01131: ATP synthase F0, A subunit" amino acids 37 to 272 (236 residues), 144.1 bits, see alignment E=3e-46 PF00119: ATP-synt_A" amino acids 38 to 270 (233 residues), 188.9 bits, see alignment E=5.8e-60

Best Hits

Swiss-Prot: 49% identical to ATP6_ACIBS: ATP synthase subunit a (atpB) from Acinetobacter baumannii (strain SDF)

KEGG orthology group: K02108, F-type H+-transporting ATPase subunit a [EC: 3.6.3.14] (inferred from 49% identity to abm:ABSDF0163)

Predicted SEED Role

"ATP synthase F0 sector subunit a"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2EJ67 at UniProt or InterPro

Protein Sequence (277 amino acids)

>ABZR86_RS13635 F0F1 ATP synthase subunit A (Dyella japonica UNC79MFTsu3.2)
MASEPQGGLTEYIQHHLHHNVVSLGDSAFMKLHLDSIVVAFVLGALFCLWFWLKARKATS
GVPSKGQAFVELIVEFVDTQVKDTFHGDRRTVTPLALSIFMWVTFLNAMDLLPLDAPAFA
VTTAAGAEAAHHTFFRWVPTADINTTVGLALAVFFIVLGHGMKAKGTLGFGKELVTAPFH
AHNPVVVAILVPFNLALNIIEYLSKPVSLAMRLFGNMYGGELVFMLIAGLFAGWLSFLPG
VLFNTAWGIFHILIILLQAFIFMMLTIVYIATAREHH