Protein Info for ABZR86_RS13245 in Dyella japonica UNC79MFTsu3.2

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1008 PF04851: ResIII" amino acids 542 to 698 (157 residues), 27.4 bits, see alignment E=4.4e-10 PF00176: SNF2-rel_dom" amino acids 547 to 827 (281 residues), 230.4 bits, see alignment E=3.8e-72 PF00271: Helicase_C" amino acids 841 to 950 (110 residues), 77.7 bits, see alignment E=1.2e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2EPP4 at UniProt or InterPro

Protein Sequence (1008 amino acids)

>ABZR86_RS13245 DEAD/DEAH box helicase (Dyella japonica UNC79MFTsu3.2)
MQQPDEKRYAEAAPPHHEENAEALPSVWRRLLDDGAAAVVAERGVLGFFIDAIPEEGTPY
VRLELAPVLLAVAEQGRFARPTPLDSRHLAHLPLDPPEQRLAATVLGLPQTVRKSRSYAR
LAGHVGDTLLAEVLDTAPCFLGGLAGLRLSRGKGHLLNWHWHLEKDGSQKLLPALPANQR
LVRIDGLWYLDAERAELGHLEAPPEETQWLDLPPLKHEDSATLRDALPGSRLAHRIPAPQ
VFDELRRSEQSPRPVLILHALTRHARLAAGTPPLAYARLAFDYAGERLPGRGGEPLVRRV
RQGTLVEITRRRAEELTAMEQLERAGLTPGVDTEGLPWDLADTLPEDAWLFPGKGYAGAL
EVNTPARWLALRPKLEAEGFLLEYAPSFPFEVLEGPVQWYGNAVEDADDHAFDLEIGIEL
EGKRHNLLPAVAQALAEHTLNLSPAPNEPEDAVWYAPVDERRRVPVRLKELRGLLAPLAE
YLEKPRKKLHLPRVQAGRLEEIVEALPSGAALEAPEQLRGFTARLRDAAERASDAVPEGL
TVELRPYQREGLRWLNALAEAGVGGVLADDMGLGKTLQLVTHLLALKERGALTQPALIVV
PTSLIPNWQAEIARFAPALKVLALHGPQRGGEFAQLGAQDIVLTSYALLPRDVVALRKQP
FELIVLDEAQQVKNPRTQARRAVLSLRAPRCICLTGTPLENHLGELWSQVDLAVPGLLGD
EGAFRRHYRVPIEKQHDTECQDRLNRRLAPFILRRTKSQVASELPPKTEITRRVVLEGRQ
RELYESLRLSLAEELREVIAQRGIQHSGIVVLDALLKLRQVCCDPRLVKLEAARGVRDSA
KFDLLMDMLPALLAEGRKVLLFSQFTEMLRLIAHELDRHRVPYVVLTGETRDRAEPVRQF
QEGDVPLFLLSLKAGGVGLNLTAADTVIHYDPWWNPAAEAQASDRAHRIGQDKPVFVFRL
ITSGTVEERIEELKARKAELAEAVLEGGGTRERLSFDEEDLDALLAPG