Protein Info for ABZR86_RS13085 in Dyella japonica UNC79MFTsu3.2

Annotation: type II secretion system protein GspK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 signal peptide" amino acids 14 to 15 (2 residues), see Phobius details transmembrane" amino acids 16 to 38 (23 residues), see Phobius details PF21687: T2SSK_1st" amino acids 109 to 196 (88 residues), 37 bits, see alignment E=5e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2ET58 at UniProt or InterPro

Protein Sequence (290 amino acids)

>ABZR86_RS13085 type II secretion system protein GspK (Dyella japonica UNC79MFTsu3.2)
MSKFRDSFPPVRQRGVALLVVLWACTLLAIVLGGYAMLARNEGLQARYQFAQLRAHYAAE
AGMTRAIYALLTPSPDRRWIPDGREYPFQFDDAKVGIRITDESGKVDINASSPDVLKALF
RAAGMNDGPANELATHVVEWRSFGNPGDLNNNAAYLAAGRDYGPRHGPFASLEELQMVLG
MDPATYRKISTSITIWSGRNAPDPNYAPALAMQAIPGMTPDQANAAYAARQQAGTSQGLG
ASQGVTHSIRSEATLPDGTRAILRATVRLQGARAGAQPYAVLRWQEGDGE