Protein Info for ABZR86_RS12945 in Dyella japonica UNC79MFTsu3.2

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF12625: Arabinose_bd" amino acids 46 to 230 (185 residues), 140.4 bits, see alignment E=1.1e-44 PF12833: HTH_18" amino acids 281 to 357 (77 residues), 67.1 bits, see alignment E=2.1e-22

Best Hits

KEGG orthology group: None (inferred from 41% identity to pfv:Psefu_2346)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2EVG4 at UniProt or InterPro

Protein Sequence (361 amino acids)

>ABZR86_RS12945 AraC family transcriptional regulator (Dyella japonica UNC79MFTsu3.2)
MARPATQAGLAPSAAHPLLADDPRYTAAEFPPNKLLYLAQMADALGIDSRAWFAGLALSR
AQIADPALRVSYRQASLFARRALQALDVPDAGLRIGREGTIGGFGLLGLAMMTSRTLGDA
MLAGIAHHKICGCLLELNFEQLSEREVALVAWPRFGDTELLPFFCEELFASCLMIARELV
GPELRPARVEFGYPRPAYARAYEELFECEVRFGTPQCRLLIGTQWLARPLPGHNPLTARQ
ALALCAQQMTPDGGEPHQEIVAAVERLLRSRLRQQPRLLDVARTLNLSERSLRRKLAESG
RIFREIHDRVRAERALELLRAGQLSVAEIGSEIGFSDPREFRRAFKRWTGMPPQHARYAG
D