Protein Info for ABZR86_RS12770 in Dyella japonica UNC79MFTsu3.2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 719 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07715: Plug" amino acids 68 to 164 (97 residues), 26.6 bits, see alignment E=1.1e-09 PF00593: TonB_dep_Rec" amino acids 259 to 674 (416 residues), 120.6 bits, see alignment E=2.5e-38

Best Hits

KEGG orthology group: None (inferred from 67% identity to sml:Smlt0936)

Predicted SEED Role

"Colicin I receptor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2EX52 at UniProt or InterPro

Protein Sequence (719 amino acids)

>ABZR86_RS12770 TonB-dependent receptor (Dyella japonica UNC79MFTsu3.2)
MKHTLLAISLAAALFTVSAQAADAPDTTTNGPNTDGASRNKQPPKVQQLGAIDVSAALDQ
SRNALSPDTGSSQYVIDQKAIAQLPLGDSTPVNQVLLQAPGVVQDSYGGLHVRGDHANLQ
YRIDGVIIPESISGFGQTLDTRTIKSVKLLDGALPAQYGLRTAAVVDISTKSGHDLGNGG
SVGITGGSFGTLNPNASLWGSSDRWSYFLTANYLESDVGIENPTPSRTPVHDHTNQVKAF
GDISYLIDNQTRLSFLFGMANSRFQIPNNPGQTPTFGYLDVTDFDSAKLNENQRENTRFG
VLALQGKLGATDYQVSIGQRYSSLTFTPDMIGDLMFNGVASSINRSNRASTLQADFATPL
GDTHTLRYGVYGSFERAPSSTNAWVFPVDADGNQSSTTPLNILDGNRLTAKTWSGYVQDE
WSIGDKLTVNYGLRGDVYKAFRTESQLSPRLGAVYQASDDTTLHAGYSRYFTPPATEAIT
TTNIQKFDGTTNALPDNGSNTPLAERSDYFDAGIQQRVGSSLTLGLDAYYRKVRRLQDEG
QFGAALVYSTFNYAKGRIRGVEFTADYDNGPWSAYFNVALSQAMGERVITSQYNFAPDDL
AYVADHYIHLDHDQKLASSGGLSYAIDPATRVGANYLFGSGLRRDGAVPNGAAMPAYFQL
NLSLSHDFEFQSTGKLHTQLAVINALDRTYQLRDGTGIGVGAPQFGPRRGLYATVQKDF