Protein Info for ABZR86_RS12625 in Dyella japonica UNC79MFTsu3.2
Annotation: amino acid deaminase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01753, D-serine dehydratase [EC: 4.3.1.18] (inferred from 78% identity to rpi:Rpic_4197)Predicted SEED Role
"D-serine deaminase (EC 4.3.1.18)" (EC 4.3.1.18)
MetaCyc Pathways
- superpathway of L-lysine, L-threonine and L-methionine biosynthesis II (13/15 steps found)
- D-serine degradation (3/3 steps found)
- L-cysteine degradation II (3/3 steps found)
- L-serine degradation (3/3 steps found)
- L-methionine biosynthesis II (5/6 steps found)
- L-tryptophan degradation II (via pyruvate) (2/3 steps found)
- glycine betaine degradation I (5/8 steps found)
- glycine betaine degradation III (4/7 steps found)
- felinine and 3-methyl-3-sulfanylbutan-1-ol biosynthesis (2/5 steps found)
- L-mimosine degradation (4/8 steps found)
- glutathione-mediated detoxification I (3/8 steps found)
- purine nucleobases degradation II (anaerobic) (9/24 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 4.3.1.18
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1I2F0M0 at UniProt or InterPro
Protein Sequence (426 amino acids)
>ABZR86_RS12625 amino acid deaminase (Dyella japonica UNC79MFTsu3.2) MSDNASRSEQLAPFVHPLDKGIGALDAPCAPEAIASHGWNLLKEDLSLPVAVLSQSRLEH NLAWMQRFASEYGARLAPHGKTTMAPRLFARQLEAGAWGITLATAQQARAAYVHGVRRIL LANQLVGRRNMAIVAELLADPSFEFFCLVDAAEQVRQLAAFFGAAGRRIQVLIELGVPGG RTGVRDEAQWQAVLDALAQSGGAVSLAGVEVYEGVLKDETAIRAFLQRGVEAVQVLARDG RLQRTPAVLSGAGSAWYDVVAEEFAKAQIGAPLDVVLRPGCYLTHDVGAYRIAQARIDAS NPQARRMRSSLLPALQVWAYVQSVPEPECAIVAMGKRDAAFDAGFPSPAAHFRPGGSAPS PVPPHWEVTGMMDQHAYLKIAAGDDLRVGDMLAFDISHPCLTFDKWRQLPVIDDAYDVVD VVQTYF