Protein Info for ABZR86_RS12545 in Dyella japonica UNC79MFTsu3.2
Annotation: transaldolase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 70% identical to TAL_ALTMD: Transaldolase (tal) from Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)
KEGG orthology group: K00616, transaldolase [EC: 2.2.1.2] (inferred from 70% identity to amc:MADE_03321)MetaCyc: 65% identical to transaldolase B (Escherichia coli K-12 substr. MG1655)
Transaldolase. [EC: 2.2.1.2]
Predicted SEED Role
"Transaldolase (EC 2.2.1.2)" in subsystem Folate Biosynthesis or Fructose utilization or Pentose phosphate pathway (EC 2.2.1.2)
MetaCyc Pathways
- superpathway of glucose and xylose degradation (16/17 steps found)
- Bifidobacterium shunt (14/15 steps found)
- pentose phosphate pathway (8/8 steps found)
- pentose phosphate pathway (non-oxidative branch) I (5/5 steps found)
- formaldehyde assimilation III (dihydroxyacetone cycle) (10/12 steps found)
- Rubisco shunt (8/10 steps found)
- formaldehyde assimilation II (assimilatory RuMP Cycle) (7/9 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from shikimate pathway
- Biosynthesis of phenylpropanoids
- Biosynthesis of plant hormones
- Pentose phosphate pathway
Isozymes
Compare fitness of predicted isozymes for: 2.2.1.2
Use Curated BLAST to search for 2.2.1.2
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1I2JEA9 at UniProt or InterPro
Protein Sequence (322 amino acids)
>ABZR86_RS12545 transaldolase (Dyella japonica UNC79MFTsu3.2) MTDSAVSNQLEQLRQYTTVVADTGDIDAIARYRPVDATTNPSLLLKATELPAYAPLIDEA VQWAKGQSASREQQLVDASDYLAVAAGRKIAELVPGRVSTEVDARLSFDTNATITKAERL IGLYAAAGVQRERILIKIASTWEGIRAAEALERRGIQCNLTLLFSFEQAVACAEAGVYLI SPFVGRIMDWYVANTSTKTYAPAEDPGVLSVRRIYSWYKQHGFDTVVMGASFRNIGQIQA LAGCDRLTISPDLLEKLEATSEPLPRALQDNGEREARLQPLDEAAFRWGHNEDAMATEKL ADGIRKFAADQRKLEAMLAARL