Protein Info for ABZR86_RS12480 in Dyella japonica UNC79MFTsu3.2

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1029 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF07715: Plug" amino acids 144 to 245 (102 residues), 31.5 bits, see alignment E=1.1e-11

Best Hits

Predicted SEED Role

"Oar protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JIF2 at UniProt or InterPro

Protein Sequence (1029 amino acids)

>ABZR86_RS12480 TonB-dependent receptor (Dyella japonica UNC79MFTsu3.2)
MTHPSHRPLHGHVSIRRTALALAIAAGCALAGQVYAQASTGAIFGTAPAAPGETVLIQSD
SGVTREVPVDASGRYSAASLPLGSYKVSLKKDGAVVESRENVGLTVGAGTQVVFAGASAA
NATNLGSVTVVGNALPAIDVSQVDSRTVINSEQLAKLPIARSAESVAILAPGVNTGSSYF
TSPTGQVLVSFGGSSVAENAYYINGFNTSDPLHNFGGLTLPYGAIDQEQVMTGGYGAAYG
RSDGGVINQVGKRGTNEWHFGAQVVWQPKFAESDPDNAMYPTGPAFLSGPNGRQGQMFWT
RQDNKSWEHVEDAYFGGPLIKDKLYIFGAVEADHIDSGVNVSDRITNTEQTYSYSRPKWY
GKIDWNITDSNILELTGASNKSTYSGNTYAYAYTPDSAKGTRGDYLGPATYTKDGADMWV
AKYTGYITDSLTVEALYGKMTQTDYSNAEGGDAAYITNSSFQNPALLPAGSSGINGTQIN
QTVDDPRSHDKTSNLRLDVNYKIGSHSITAGIDNLSVNAIDIGTTPSGPGYYWVYGQGDP
NTPISTLPGEGVGAPGGAGYYVAQTIYSNSASARVKQHAQFIEDAWQINDRILLNIGIRN
DQFTNYNPDGVPYLRLTRPQWAPRLGASWDVFGDSSLKIYGNAGRYYLDEPANVAIRGAA
GSTFTSQYFTYSGIDPVTGAPTGLVQIPQDRYPGVSANNEFGIPPDPKTVTSRNAKAEYQ
DEYIAGFDKTLDAFGQKWVYGAKGTYRVLRNDLDDVCDDNTIQAYAVQQGLDPVAALGST
GCYIMNPGKSAQINVSNGAGGYSILNIPWSAWGMPDLKRKYVALNTYLEHPFDGKWYGRI
DYVWSHNFGNTEGSVRSDIGQTDVSQTEDWDNAGVMTNSNGSLANDRRHQLKMVGYYQVT
PEWMIGGNVQILSGTPKTCLSYFGPDQTDPFGYGVAYHFCGPDGTPAPYGSTGRTPWQEI
VSLNGEYRPEWAGKKLAFDVMVYNIFDKQVVTQYRQGSVSGPGTPSVNWQTPLSYTTPRY
VRFSVSYDF