Protein Info for ABZR86_RS12430 in Dyella japonica UNC79MFTsu3.2

Annotation: ribosome small subunit-dependent GTPase A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 TIGR00157: ribosome small subunit-dependent GTPase A" amino acids 68 to 314 (247 residues), 147.6 bits, see alignment E=2.3e-47 PF03193: RsgA_GTPase" amino acids 85 to 260 (176 residues), 165.5 bits, see alignment E=1.6e-52 PF00005: ABC_tran" amino acids 185 to 230 (46 residues), 34 bits, see alignment 6.5e-12 PF01926: MMR_HSR1" amino acids 196 to 257 (62 residues), 26.6 bits, see alignment E=8.4e-10

Best Hits

KEGG orthology group: K06949, ribosome biogenesis GTPase [EC: 3.6.1.-] (inferred from 44% identity to rci:RCIX961)

Predicted SEED Role

"Probable GTPase related to EngC" in subsystem Universal GTPases

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.-

Use Curated BLAST to search for 3.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JBZ9 at UniProt or InterPro

Protein Sequence (351 amino acids)

>ABZR86_RS12430 ribosome small subunit-dependent GTPase A (Dyella japonica UNC79MFTsu3.2)
MTEAETIERLRSVGWRGDALPAGQLRLARVVAQHRAGYELHDGVALFGAQPAGHFLKRGL
DPAERPAVGDFVELEPGNPPHIAKVLPRRSVLSRAAAGERYERQIIATNIDYVLVLTGLD
GDFNPARIERYLSLTEDSGAQPVVLLSKLDIRDDADALLATLRSRLPAGTPIHAINGKDP
ASVAELSRYLQPGDSAVLVGSSGAGKSTLTNTLLGTQRMATGEVRAHDSRGRHTTTHRAL
LQLPSGGCLIDTPGMRELKLTGEENLDLFADIDELAQRCRFADCGHGSEPGCAVQAALDN
GELSAERWRNYLKLRDEREEQAATLEARLRRQRGGRPPTKPHGHRGGRERE