Protein Info for ABZR86_RS12235 in Dyella japonica UNC79MFTsu3.2

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 89 to 111 (23 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 197 to 215 (19 residues), see Phobius details amino acids 233 to 256 (24 residues), see Phobius details amino acids 281 to 306 (26 residues), see Phobius details amino acids 331 to 349 (19 residues), see Phobius details amino acids 357 to 375 (19 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 416 to 435 (20 residues), see Phobius details PF13520: AA_permease_2" amino acids 12 to 413 (402 residues), 187.5 bits, see alignment E=4.3e-59 PF00324: AA_permease" amino acids 19 to 411 (393 residues), 92 bits, see alignment E=3.8e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2GUM2 at UniProt or InterPro

Protein Sequence (442 amino acids)

>ABZR86_RS12235 amino acid permease (Dyella japonica UNC79MFTsu3.2)
MTDTSPSYLRRLGTWDAAAIVIGGVIGGGIFRSASTVAERTSSGWELLLLWAIGGALTLA
GVLCYAELGARRPQAGGIYIYLREAFGQLPAFLFGWTMALINYPGSVAAVATTFADYFCA
AVGLPVLWVKPVAAAAITFIVGVNFFGIRAGSRMLNVFTVLKLAAIAMLVATALVLARGH
LGMALAPDPAHQARPWDFLGALLPVLFTYGGFHYLNDLAGEVREPQRTLPRALGLGLAAV
VLCYLLVNFAYVAGLGHAGLAASRAPAADLMQRLFGDAGARVMAIGIACSTFGYCSIAIA
GGARVLQTMGADGMFFRAVGRIDAQSRAPQVALAVLGGWAIVLVLSGSFGQLLNYTTVGE
WLFHAFGIATLFWYRRRFAAEPAPYRVPFYPVLPFLFVLTVLGVIAATTIDSPGDAGMSL
LLVVLGVPVYLVWRAWQRRGTA