Protein Info for ABZR86_RS11800 in Dyella japonica UNC79MFTsu3.2

Annotation: type 4a pilus biogenesis protein PilO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details PF04350: PilO" amino acids 50 to 194 (145 residues), 170.1 bits, see alignment E=1.8e-54

Best Hits

KEGG orthology group: K02664, type IV pilus assembly protein PilO (inferred from 60% identity to xoo:XOO1159)

Predicted SEED Role

"Type IV pilus biogenesis protein PilO" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2H372 at UniProt or InterPro

Protein Sequence (217 amino acids)

>ABZR86_RS11800 type 4a pilus biogenesis protein PilO (Dyella japonica UNC79MFTsu3.2)
MKLLNDLRNLDRNNIGGWPKSAKIFFTVLLFGLVGFFGWYLIISDQQDNLNTLAGKEEQL
KQEFSQKQAKAVNLEALQQQLDEMQDMLRQLLRQLPSRTEMPELLVDISQTALSAGLETE
LFQPGAEIPKDFYAEKPIQLRMVGNYHQFGTFISGVASLPRVVILTLHDVSLTPKDKNGM
LVLQGTVKTYRYLEDDESAEAKAANARPAGAKTGGQK