Protein Info for ABZR86_RS11430 in Dyella japonica UNC79MFTsu3.2

Annotation: VirB3 family type IV secretion system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 transmembrane" amino acids 22 to 51 (30 residues), see Phobius details PF05101: VirB3" amino acids 3 to 82 (80 residues), 87 bits, see alignment E=4e-29

Best Hits

KEGG orthology group: K03198, type IV secretion system protein VirB3 (inferred from 68% identity to xcb:XC_1638)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2HHQ4 at UniProt or InterPro

Protein Sequence (101 amino acids)

>ABZR86_RS11430 VirB3 family type IV secretion system protein (Dyella japonica UNC79MFTsu3.2)
MHKNALFRGCTRPPMFMGVPYVPFFIGAGSGLLLAMYSGNMLLLAIIPPIVMVMRQMARR
DELIFRLLGLRLQFRTRVRNLQQNEGMWVFTPNAYRDHKNK