Protein Info for ABZR86_RS11385 in Dyella japonica UNC79MFTsu3.2

Annotation: penicillin-binding protein activator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 605 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF04348: LppC" amino acids 49 to 575 (527 residues), 350.6 bits, see alignment E=1.9e-108 PF13458: Peripla_BP_6" amino acids 252 to 513 (262 residues), 60.5 bits, see alignment E=2.4e-20

Best Hits

Predicted SEED Role

"LppC putative lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2HHX9 at UniProt or InterPro

Protein Sequence (605 amino acids)

>ABZR86_RS11385 penicillin-binding protein activator (Dyella japonica UNC79MFTsu3.2)
MRLIRATGLGLMISLALAGCVPPSVTRTPAEVSAEESAAAMARDGHFDQAAQAYLALAQS
STGAADHYRLLAAEAYRQEGRLEQAASFLPTIKRQRLTGDEPVRLDLLQAEFALSQNNPQ
RALQLTTQPGVAVPASLQLRQLELRAKAMDATGDPWGAARSRVEMDDRLSGLDQTQNRKQ
ILSQLGKLGVEPLKQRAGAMQQGDRMLPWINEALSQLGVAVARPQPALEQQVGTMIPGQD
ANVREGYKMPERVALLLPASGSFAAAGAAIREGFFAAYADAARNKAPRPPVKVYDSGGTP
AGAVKAYQQAVADGARLVVGPLTRSEVSALFGQAQLPVQLLALNHPDDKSLPAGGVAEFG
LLPETEGAQAADHMVERGLHTAYVVVTGEDYGQRAANAFKAELEARGGKVAAMATLNGSG
VNYASLIAGLNAANAGDDAGVFISMRPQQARLLLPQLRLARVSLPVFATSHVYAGVDDAG
ANHDLEGVEFCDAPWLFDAQPGLPDHGEIAAQLPSARGPAARLFAFGMDAWNLIPYVDWL
REHTGSYLPGASGQLTADQFGRVRRVLVWAKFQDGLAHPLSGSLQMDSAPPQTPPAGTEQ
PPSQG