Protein Info for ABZR86_RS11095 in Dyella japonica UNC79MFTsu3.2

Annotation: LacI family DNA-binding transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 PF00356: LacI" amino acids 12 to 57 (46 residues), 42.2 bits, see alignment 1.1e-14 PF00532: Peripla_BP_1" amino acids 69 to 326 (258 residues), 109.3 bits, see alignment E=5e-35 PF13407: Peripla_BP_4" amino acids 71 to 323 (253 residues), 81.5 bits, see alignment E=1.5e-26 PF13377: Peripla_BP_3" amino acids 184 to 344 (161 residues), 123.1 bits, see alignment E=2.6e-39

Best Hits

KEGG orthology group: K02529, LacI family transcriptional regulator (inferred from 67% identity to smt:Smal_1775)

Predicted SEED Role

"transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2JZW4 at UniProt or InterPro

Protein Sequence (350 amino acids)

>ABZR86_RS11095 LacI family DNA-binding transcriptional regulator (Dyella japonica UNC79MFTsu3.2)
MESSTSIRRKITLNDIAAGCGVSRATVSLVLRGSPLVNKHTRARVEEELRKQGYVYNRAA
ANLRRRTSSSIALVLNELGNPFFAEFAAGVDETLGQAGFVTLLGSTGESVEREQAVLSSL
IEHGPGGIILSPAEGSAAERVLAAVGAQTPVLLFNRELGGNLPEYAHWDRLMLDNQHGAR
LATEHLIAQGHKRIAFFGGHSDSSSCRQRHAGYVEAMNAAGLPIAPRWRVETMPTRMDAA
RACAELFAAKPAPTAAVCYNDAVALGLMLGLNQRGIQPGRDFALTGFDDIAEAAFSMPPL
TTLATDPRARGRQAAQLLLARLRKPQADATTTVAQVTLVVRESSGAPRPT