Protein Info for ABZR86_RS10610 in Dyella japonica UNC79MFTsu3.2

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 310 to 334 (25 residues), see Phobius details amino acids 358 to 387 (30 residues), see Phobius details amino acids 400 to 420 (21 residues), see Phobius details PF12704: MacB_PCD" amino acids 20 to 220 (201 residues), 80.2 bits, see alignment E=2.6e-26 PF02687: FtsX" amino acids 313 to 430 (118 residues), 62.4 bits, see alignment E=4.1e-21

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 45% identity to gag:Glaag_1961)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2FH33 at UniProt or InterPro

Protein Sequence (437 amino acids)

>ABZR86_RS10610 ABC transporter permease (Dyella japonica UNC79MFTsu3.2)
MFAYYFQLGLRSLRKNPLLTALMVMAIGFGVAASMTTYSVFRATSNNPIPQKSSQLFVPQ
IDNWGPEDAQQNQGEPPRAMSYTDAIGLMRDHKAKRQTALYPAGLSIVPADASQLPFREN
TYGVYADAFPMFDIPFKYGRGWTQADDDAHAQVAVIGQQLNEKLFRGENSVGREINLDGR
SYRIVGVMDHWDPQPLFFDAVNTGGFDDPTQLFVPFTRMIELKVSTNGNNNCNKDPGTGW
DNWLHSECVWLGFWAELPSKAEADAYRSYLNGYAAEQQRAGRFKWAPNTRLRNVVEWLDY
QKVVPPEAKISLLVALGFLVICLVNTIGLLLAKFMRRSSEIGVRRALGASRREIYTQFLI
EASAVGLAGGLLGLLLTGVGVYGISLIFDPQVARLAKLDVPLVLLTLLVAILATVIAAFY
PTWRAAQVQPAWQLKSN