Protein Info for ABZR86_RS10115 in Dyella japonica UNC79MFTsu3.2

Annotation: response regulator transcription factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF00072: Response_reg" amino acids 8 to 115 (108 residues), 86.9 bits, see alignment E=1.6e-28 PF02954: HTH_8" amino acids 138 to 177 (40 residues), 50.5 bits, see alignment 2e-17 PF13556: HTH_30" amino acids 148 to 177 (30 residues), 28.4 bits, see alignment 1.7e-10

Best Hits

KEGG orthology group: K15012, two-component system, response regulator RegA (inferred from 63% identity to psa:PST_1004)

Predicted SEED Role

"Dna binding response regulator PrrA (RegA)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2IKE5 at UniProt or InterPro

Protein Sequence (187 amino acids)

>ABZR86_RS10115 response regulator transcription factor (Dyella japonica UNC79MFTsu3.2)
MTDQQPLLIVDDDATFARVLARAMSSRGFEVLTAANADEARALARRHHPRYCVLDLKLGD
ENGLRLIPELRSLVPDMRVLLLTGYASIATAVEAIKRGAHDYLAKPVDADAVLRALLEGD
APTGDDELADAPEAPLALRRLEWEHIQRVLTECDGNISETARRLGMHRRTLQRKLSKHPV
RERPEQE