Protein Info for ABZR86_RS09930 in Dyella japonica UNC79MFTsu3.2

Annotation: transporter associated domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 PF00571: CBS" amino acids 66 to 123 (58 residues), 34.1 bits, see alignment E=2.8e-12 amino acids 136 to 185 (50 residues), 25.1 bits, see alignment 1.8e-09 PF03471: CorC_HlyC" amino acids 203 to 279 (77 residues), 75.2 bits, see alignment E=3.3e-25

Best Hits

Swiss-Prot: 49% identical to CORC_VIBCH: Magnesium and cobalt efflux protein CorC (corC) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K06189, magnesium and cobalt transporter (inferred from 61% identity to xal:XALc_2086)

Predicted SEED Role

"Magnesium and cobalt efflux protein CorC" in subsystem Copper homeostasis: copper tolerance or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2IM60 at UniProt or InterPro

Protein Sequence (282 amino acids)

>ABZR86_RS09930 transporter associated domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MNEDPGSTSGPAHRKWWDRLGHLFSGEPRNREELIEELRSAQANGLMSNDTLTMVEGAIK
VTELSVDDVMVPRAQIVMVSAEAPLSEIFATVVESGHSRFPVHGEDKDEILGILLAKDLL
KFVGDGRDFSLATVLRPAVLIPEAMRLNVLLAEFRHTRNHMALVVDEYGGVAGLITIEDV
LEQIVGEIDDEHDDEEEPELMHEQAGGGWLVSALTPIADFNEQAGAAFSDEEFDTVGGMA
TSEFGHLPEVGEEVAIGDYLFLVTEADDRRVQQFRVTRLAEG