Protein Info for ABZR86_RS09925 in Dyella japonica UNC79MFTsu3.2

Annotation: rRNA maturation RNase YbeY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF02130: YbeY" amino acids 29 to 151 (123 residues), 122.2 bits, see alignment E=6.4e-40 TIGR00043: rRNA maturation RNase YbeY" amino acids 49 to 153 (105 residues), 116 bits, see alignment E=4.4e-38

Best Hits

Swiss-Prot: 67% identical to YBEY_STRMK: Endoribonuclease YbeY (ybeY) from Stenotrophomonas maltophilia (strain K279a)

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 68% identity to psu:Psesu_0825)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2IM97 at UniProt or InterPro

Protein Sequence (160 amino acids)

>ABZR86_RS09925 rRNA maturation RNase YbeY (Dyella japonica UNC79MFTsu3.2)
MSPAKAAAASNLSLSVGYAAPRAGVPSSASFRRWVEAALRGARRRKATELSIRIVDAREG
RALNRDYRGKDYATNVLSFPAELPPGVALPLIGDLAICAPVVAREAAEQGKAPRDHWAHM
TVHGVLHLLGYDHQEDAEAEAMEALETRTLAGLGIADPYA