Protein Info for ABZR86_RS09605 in Dyella japonica UNC79MFTsu3.2
Annotation: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 67% identity to sml:Smlt2007)Predicted SEED Role
"Acetylornithine aminotransferase (EC 2.6.1.11)" in subsystem Arginine Biosynthesis extended (EC 2.6.1.11)
MetaCyc Pathways
- L-arginine biosynthesis III (via N-acetyl-L-citrulline) (9/9 steps found)
- L-arginine biosynthesis I (via L-ornithine) (8/9 steps found)
- L-ornithine biosynthesis I (5/5 steps found)
- L-arginine biosynthesis II (acetyl cycle) (8/10 steps found)
- superpathway of arginine and polyamine biosynthesis (12/17 steps found)
KEGG Metabolic Maps
- Arginine and proline metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Lysine biosynthesis
- Urea cycle and metabolism of amino groups
Isozymes
Compare fitness of predicted isozymes for: 2.6.1.11
Use Curated BLAST to search for 2.6.1.11
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1I2IB01 at UniProt or InterPro
Protein Sequence (498 amino acids)
>ABZR86_RS09605 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme (Dyella japonica UNC79MFTsu3.2) MGVIDQLRELRDFGGAPQTTGLDDAIIERFAASHPELAQAIGEAVEQHRALRADLSDFLK LDEAEQLQVAQAGFVNFYPDDGINRYLPAAARGPWVVTLKGSVIHDNGGYGMLGFGHNNE AIRTAMSRPQVMANVMTPNVSQMRFAQALDRELGRNRGGNPYARYLCLNSGSESVSLACR IADVNAKAMTEPGARYAGRTIKRLAVKGAFHGRTEKPALYSDSTRKTYQQHLASYRHEDT LITVAPYDVAQLEAAFADADRHGWFIEAMFLEPVMGEGDPGRAVTPEFYKAARELTEAHG SMLLIDSIQAGLRAHGVLSLTDYPGFENLPAPDMETFSKALNAGQYPLSVLAVNERAAGL YRKGIYGNTMTANPRALDVALATLDELTDEVRANIRERGKEFVDKLNALKNELGGLITKV QGTGLLFSCELSPEFKCYGAGSIEEYMRERGVGVIHGGVNSLRFTPHFKVTSAEVDLVVA HVRQALQQGPRKLKAEAA