Protein Info for ABZR86_RS09305 in Dyella japonica UNC79MFTsu3.2

Annotation: YggS family pyridoxal phosphate-dependent enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 TIGR00044: pyridoxal phosphate enzyme, YggS family" amino acids 11 to 230 (220 residues), 173.9 bits, see alignment E=2e-55 PF01168: Ala_racemase_N" amino acids 13 to 229 (217 residues), 83.6 bits, see alignment E=8.7e-28

Best Hits

Swiss-Prot: 37% identical to PLPHP_HAEIN: Pyridoxal phosphate homeostasis protein (HI_0090) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K06997, (no description) (inferred from 70% identity to mjd:JDM601_4167)

Predicted SEED Role

"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2I5J2 at UniProt or InterPro

Protein Sequence (231 amino acids)

>ABZR86_RS09305 YggS family pyridoxal phosphate-dependent enzyme (Dyella japonica UNC79MFTsu3.2)
MNHDYGYLAANWAAVRQRVDAACREAGRDPAEVDVLPVSKTFGADAIRAATALGLHRFGE
NKVQEIREKAGPLADCGIAWVVIGHLQTNKAKDVARLASEVQSLDRWELAEALDRRLQAE
GRAIDVLVQVKTSPEQSKQGLDPAQLPDFLARLRGLDTLRVRGLMTMAVVADESAPVRAC
FRLLRELRDRMAGEGHQLPRLSMGMSGDFPLAVAEGATELRIGTAIFGRRA