Protein Info for ABZR86_RS09195 in Dyella japonica UNC79MFTsu3.2

Annotation: PilC/PilY family type IV pilus protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1416 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 896 to 1243 (348 residues), 162.4 bits, see alignment E=8.5e-52

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2D842 at UniProt or InterPro

Protein Sequence (1416 amino acids)

>ABZR86_RS09195 PilC/PilY family type IV pilus protein (Dyella japonica UNC79MFTsu3.2)
MRIRQLFSTRRGIAALALGLTLLGGLPVPFVPTADAQIAPVLASSILATTSTAATPSAVV
ELSPTPPNLTQGVAPNIAVTFDDSGSMASNYMGDNRPFDDGSWTGPWRCAGVIDPRVSSA
TNILSHAMNGVYYNPNVVYSPPIEADGTSFPNADANLVRVPLDGISVNRPRSAVALDATG
AYRNNPNGTTDPTGATDLTAIWSSTQTKTGSSCPANADPGSCVCIDQRPNGTCRSNSKSW
QWTETTPNSGTDNRWKCGYGSSPMDYTKNGPDGVAYPNGGPYYYRYKSSAPAITVDAYGN
PDSTGLNNLYSGSNWEAVAVRNQNVTIGGVTVNEWQNFANWYAYYRTRNLMTRTALSRVF
GKLGAPNSDGGYGSTFRVAWQNLYTDDTFRLQSSTIISNLMDANSPACDASSTDPTAIGL
QTGTVKTPPNCYRSAFFNWIFQVPATGNTPLRASTIRAGSFFQRGYGNTGANGDLHDPYW
DPPAKTGADGLELTCRQNFHMVVTDGYWNESDPGLPTPFKDGETAQTLPDGTAYSTAAAE
SRVFWDVQGAKYTSSLANIAFNYWSSNLRPDLYDPANGKQVPPYMPDKSTGVVTGASSTT
LEQYFNPKNDPANWPHLVQYMVTLGIAGELNFTNDADCVVSTANDLCALRRGQTNSTGAR
GWTLPANNSPPGIDDTWHAAINSRGAYFSAGNPQNLVDQLSAILTNISARTIPANTGAVN
SAVLVPGALGFNTGYSSADWSGTFQAVSVSANGSTSTTVWDAGALLDDATKSPPGSRNIL
TAKEGSDGSFAGGVAFKTFTALDSAGQTLLSGTPASIDATNDTGQTRVDYLRGDRSKEST
TFRQRNHLLGAIIGSQAVYVSYPASGYRNGWPTGSPEQTAVAGDAANCATLTPLTCHTYE
AFVKNNLSRKPVVYVGANDGMLHAFDASLTTDASGNVTPATGAGLELFGYVPRSVYGNLG
NLTLKDNFKFMPTVDGVPVTRDVYFSQTTTSPVSTSQGWHTLLVGGLRLGGRGVYALDIT
DPSSMGTAKVLWEFNADTPVQGTWTDGSTTNPGGNPANIGYTYGQPNIGRLNNGKWVVLV
PGGYFPDCTKAPFTGANCTSPAAASNTFSSLFVLDAQTGKLIRELKTPGTSAGGANSHGL
ATPVLGDYNDDQVDDVSFAGDLDGNLWRYDLSSSDPNAWSVTLAFKPATAGAQPITSMPR
LFADPVTNKFIVVFGTGKYLGVSDNTSGSAVTQSVYGIRDVGSTVTRSQLVAQTLSEALA
DDGKTIARGITDNPVPSTKNGWYFDLGPSTSSAGERVVVTPGALFDTGRVVIQTLIPGTN
DPCNASIQGALMVVNAATGGANGGLSAPGVSSWAGTNTAVVGGRVNDPRTSGTVPLVTTV
GGGSVLVPGLKLSGSNNVLNINDAIWRRRSWRGITQ