Protein Info for ABZR86_RS09185 in Dyella japonica UNC79MFTsu3.2

Annotation: GspH/FimT family pseudopilin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details PF07963: N_methyl" amino acids 7 to 28 (22 residues), 28.7 bits, see alignment (E = 6.8e-11) TIGR02532: prepilin-type N-terminal cleavage/methylation domain" amino acids 7 to 29 (23 residues), 27.3 bits, see alignment (E = 1.1e-10) PF12019: GspH" amino acids 44 to 180 (137 residues), 39.4 bits, see alignment E=8.1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2D9U4 at UniProt or InterPro

Protein Sequence (196 amino acids)

>ABZR86_RS09185 GspH/FimT family pseudopilin (Dyella japonica UNC79MFTsu3.2)
MKRQGTNGFSLIELMITLSIAAILLVVAAPSFRDAMRRNKVSAASNALLADIAYARSEAI
NRGNVVSICPSSDQATCTGNGKAYENGWLVYTYQAGKGVANTAYSTASGAILLRAANARD
GLSIQGLDSVITSFGSQGQIRRSDNKQPKFASCFRPTGASGTGSSTTAVPGAQLTVNASG
SVTSQSLGVQSTCVPT