Protein Info for ABZR86_RS08990 in Dyella japonica UNC79MFTsu3.2

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 632 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF00270: DEAD" amino acids 37 to 203 (167 residues), 174.7 bits, see alignment E=2.8e-55 PF04851: ResIII" amino acids 56 to 197 (142 residues), 27.9 bits, see alignment E=4.1e-10 PF00271: Helicase_C" amino acids 239 to 347 (109 residues), 104 bits, see alignment E=1.1e-33 PF03880: DbpA" amino acids 516 to 586 (71 residues), 69.6 bits, see alignment E=3.8e-23

Best Hits

KEGG orthology group: K05592, ATP-dependent RNA helicase DeaD [EC: 3.6.4.13] (inferred from 66% identity to xcv:XCV2974)

Predicted SEED Role

"DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13)" (EC 3.6.4.13)

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2DCU1 at UniProt or InterPro

Protein Sequence (632 amino acids)

>ABZR86_RS08990 DEAD/DEAH box helicase (Dyella japonica UNC79MFTsu3.2)
MSSPSSESQPAAAGFAALALKPEVLKALSDVGYESPSPIQAATIPPLLEGSDVLGQAQTG
TGKTAAFALPILSRIELKPGKPQALVLAPTRELAIQVAEAFQRYAAHMPGLQVLPIYGGQ
SYGPQLHALKRGVQIVVGTPGRVIDHLERGTLDLSELKFLVLDEADEMLRMGFIDDVEKV
LQATPPSRQVALFSATMPAPIRKIAQQHLKEPVEVTIKSSTTTAANIRQRYWFVSGLHKL
DAMTRILEAEPFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKD
GKLDVLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPRE
KGMLRAIERATRQPIEEMRLPTVEAVNDVRIARFKQRISDTLAVGELELFQQLIEQYEQE
HNIPAVEIAAALARIAQGDQPLLLTPPPKRDFAPRERDDRQDNRRDDRRGADRDGPRNSQ
QDRGEREQRPRDRDGAPREFGTRPVRPHQTEEGKRTYRVEVGHEHGVKPGNIIGAIANEA
GLESGFIGRLSIRGEYSLIDLPDGMPKEVFEHLKKVWVSQQQLRIKEWDGDDSGAGEAPP
RRSGPRPGGFKGPAKGGPGKRPQGGKPFKKKY