Protein Info for ABZR86_RS08920 in Dyella japonica UNC79MFTsu3.2
Annotation: N-formylglutamate deformylase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01458, N-formylglutamate deformylase [EC: 3.5.1.68] (inferred from 65% identity to psu:Psesu_2209)MetaCyc: 46% identical to N-formylglutamate amidohydrolase (Pseudomonas putida)
N-formylglutamate deformylase. [EC: 3.5.1.68]
Predicted SEED Role
"N-formylglutamate deformylase (EC 3.5.1.68)" in subsystem Histidine Degradation (EC 3.5.1.68)
MetaCyc Pathways
- L-histidine degradation II (5/5 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 3.5.1.68
Use Curated BLAST to search for 3.5.1.68
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A1I2DDX7 at UniProt or InterPro
Protein Sequence (259 amino acids)
>ABZR86_RS08920 N-formylglutamate deformylase (Dyella japonica UNC79MFTsu3.2) MDTYTLHQGSAPLLISLPHDGSFIPESIAARLHPSARRAPDTDWHVGRLYQPLAQALGAS VIRPRLSRYVVDLNRPADGHALYPGQRETGLVSTIGFDGVPLYLDGQAPDAAEVQQRVND YWRPYHQALAQEIARLLDTHGRVVVWEGHSIRSLVPMLFEGRLPDLNLGTADGASCAPAL QERLAARLEAQSDYAFVVNGRFKGGYITRQYAQPEQGVQTVQLELAQLNYMDEDSFAYDE AKAARLQPLILALLRECVA