Protein Info for ABZR86_RS08635 in Dyella japonica UNC79MFTsu3.2

Annotation: elongation factor P-like protein YeiP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 PF08207: EFP_N" amino acids 2 to 60 (59 residues), 36.4 bits, see alignment E=6.2e-13 PF01132: EFP" amino acids 70 to 123 (54 residues), 49.1 bits, see alignment E=6.6e-17 PF09285: Elong-fact-P_C" amino acids 131 to 186 (56 residues), 74.6 bits, see alignment E=6.2e-25

Best Hits

Swiss-Prot: 66% identical to EFPL_XANC8: Elongation factor P-like protein (XC_2359) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K02356, elongation factor P (inferred from 66% identity to xcb:XC_2359)

Predicted SEED Role

"Translation elongation factor P-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2DKT5 at UniProt or InterPro

Protein Sequence (188 amino acids)

>ABZR86_RS08635 elongation factor P-like protein YeiP (Dyella japonica UNC79MFTsu3.2)
MKASDVKKGNVVEHEGTVYQVRDIERSSPTARGGNVTFRFTLYSIPGARKFDLSLRADDD
LKEMDLVRRAANYSYKDDEAFVFMDAEDYTQYLLGPELVGDNAGYIVEDTEGFYVQLIDD
APVGLQVPTSVMLEVVDTAPELKGASATKRTKPAKLSTGVEIQVPEYITNGEKVWVNTTT
GEFGGRAS