Protein Info for ABZR86_RS08510 in Dyella japonica UNC79MFTsu3.2

Annotation: POTRA domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF08479: POTRA_2" amino acids 65 to 139 (75 residues), 60.5 bits, see alignment E=1.1e-20 PF03865: ShlB" amino acids 330 to 519 (190 residues), 51.3 bits, see alignment E=1.3e-17

Best Hits

KEGG orthology group: None (inferred from 48% identity to bgf:BC1003_1983)

Predicted SEED Role

"Probable activation/secretion signal peptide protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2DN46 at UniProt or InterPro

Protein Sequence (559 amino acids)

>ABZR86_RS08510 POTRA domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MRRWLVFATAAAASTTGWAQSRPPVPNPLQTLPRVETPARQPSVTLNVEQQRNDQLAALM
ALTLTPTRIDIGGVHSVPFDQVAALFKPLTGKTVRIADLVAAADACTKLYQQHDYALSFC
FIPAQNFQDGVVTVSVVEGYVAAVDVTGAPGNMERKIRAIASHITADRPLRRSTFERYIQ
TLGMLPGAKIDADIPAPTTTDGATRLKLAVKRQRYDMSTGIDTNHPGVQGIFAGTLNGMT
PLAEQFNASVLYPPGRGKQQFYSAGYAQMLGSSGLMGRLNASHYYGNPDIDNQLPSYLRH
RLTQDRLDLSLSYPLLLSSRRSLVLGGGLYGSNQRDKYRNLDNGAQLELQNDVRVLHAEL
DFTQAAEKRTRKLGFGIAQGLDALGAASRGLTNIPGAFVANPTDVSFTRYNLNAMQSDTW
PAHLVTVASVVGQYSHYRLPSTEQISFGGPRFALGYDPGSVSGDSGWGASLELNRSFKVS
AKWVTMLTPYVLGQMARVYLNGARPAADSLQTAALGLRLTDGKHYTVDVSAAQPVGDKTQ
DNLARHTRYDLTFSYQLFP