Protein Info for ABZR86_RS08150 in Dyella japonica UNC79MFTsu3.2

Annotation: DeoR/GlpR family DNA-binding transcription regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF08220: HTH_DeoR" amino acids 19 to 69 (51 residues), 54.7 bits, see alignment 1e-18 PF08279: HTH_11" amino acids 19 to 60 (42 residues), 23.9 bits, see alignment 4.5e-09 PF00455: DeoRC" amino acids 86 to 243 (158 residues), 145.4 bits, see alignment E=2.2e-46

Best Hits

Swiss-Prot: 37% identical to GLPR_ECOLI: Glycerol-3-phosphate regulon repressor (glpR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 52% identity to bge:BC1002_4353)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2DU87 at UniProt or InterPro

Protein Sequence (270 amino acids)

>ABZR86_RS08150 DeoR/GlpR family DNA-binding transcription regulator (Dyella japonica UNC79MFTsu3.2)
MSRHLASASLPAEALPQERQQWILQRLRSQGRVVAAELAAECQVSEDSIRRDLRELAAQG
LCKRVYGGALPLTVPVQPLKQRRGEHAGRKQALARKAATLVRQGQILLIDAGSTNTAIAA
ALPERSQLTVVTNAPDVALALLDREGFEILLVGGRVDPRIGGAVGAQAVKSLQGIRADLC
FPGACALDLDGGLWGFDSEEVLFKRTMVECSGETAVVVTSDKLGAVATHRVAELAEVQHL
VVEHEVDKATRAAYAARGVTVYRAEAGNGE