Protein Info for ABZR86_RS08080 in Dyella japonica UNC79MFTsu3.2

Annotation: transcription elongation factor GreB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 TIGR01461: transcription elongation factor GreB" amino acids 12 to 165 (154 residues), 187.2 bits, see alignment E=8.1e-60 PF03449: GreA_GreB_N" amino acids 14 to 83 (70 residues), 86 bits, see alignment E=1.6e-28 PF01272: GreA_GreB" amino acids 92 to 165 (74 residues), 87.2 bits, see alignment E=5.7e-29

Best Hits

Swiss-Prot: 74% identical to GREB_XANCP: Transcription elongation factor GreB (greB) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K04760, transcription elongation factor GreB (inferred from 75% identity to xca:xccb100_1598)

Predicted SEED Role

"Transcription elongation factor GreB" in subsystem Transcription factors bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2DVU5 at UniProt or InterPro

Protein Sequence (165 amino acids)

>ABZR86_RS08080 transcription elongation factor GreB (Dyella japonica UNC79MFTsu3.2)
MSRWRPPSPSSTAIITRDGFEKLKSELDHLWHTLRPEVVKALAAAAAEGDRSENAEYTYR
KKQLGEIDRRVRYLSKRIPALKVAEGAPADREAVFFGARIELENVDSGEAVIYRIVGPDE
TDARAGWISIDSPLARAVLKKRVDDEFEAELPGGRTRFAIVSVEY