Protein Info for ABZR86_RS07660 in Dyella japonica UNC79MFTsu3.2

Annotation: exodeoxyribonuclease V subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1162 PF04257: Exonuc_V_gamma" amino acids 17 to 372 (356 residues), 331.2 bits, see alignment E=6.4e-103 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 17 to 1113 (1097 residues), 1117.5 bits, see alignment E=0 PF17946: RecC_C" amino acids 851 to 1095 (245 residues), 162.3 bits, see alignment E=1.4e-51

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2FT12 at UniProt or InterPro

Protein Sequence (1162 amino acids)

>ABZR86_RS07660 exodeoxyribonuclease V subunit gamma (Dyella japonica UNC79MFTsu3.2)
MTATLALPLDVPIEPGLMVIHGNRLEDLRDLLTAWIQRTPLRPLEDELMLVQSNGIAQWL
KLALARPPEAGGLGISAAVQVQLPGRFLWDAYRAVLGRDAVPPTSPFDKSRLAWRLLRLI
PRHLDDADFRPLRDFLGEQPDWRKRYQLAARIADLFDQYQVYRAHWLADWERGVDELADD
WRGRRAPLPSGQRWQAQLWRLLLDDVGPAFRDSHRAAVHAAFVERAQAMAERPARLPRRI
VVFGISSLPLQTLEALTALARHSQVLLMVANPCRHYWADIIEDRELLRGERRRQPGKPGL
PEQPRYEELHLHANPLLAAWGKQGRDYIRLLDSFDQPERYRRRFSAWGSSIDLFADPGRD
TLLHQVQQAVLDLEPLPGDPAQRRAWREDDDSLSFHVAHNAQREVEILHDRLLALFEQAQ
REGRPLAPRDVIVMVPDIQGYAPHVQAVFGRIPPGDPRHLPYAVADQPDRGAAPLLVALE
HLLSLPESRFTVSDILDLLDVPALRDRFDIDETGLPTLRRWIEGAGIRWGLDGAQKESLG
LPPQAQNSWAFGLRRLLLGYAVGPGETWQDTAPYGEVGGLDASLLGPLSRLLDQLELHWH
ALRAPAAPMVWATRLRDLLAAFFDSGDGTDGDRLRRLDESLDAWLDACAEAALDEPLPLE
IVREHWLESIDASRLSQRFMGGAVSFGTLMPMRAIPFRVVCLLGMNDGDYPRQQTPADFD
LMAQPGQALPGDRSRREDDRYLFLEALLSARDTLHVSWVGRSVRDNTVLPPSVLVGQLRD
YLAAGWRPAQDADDLPGELTTEYPLQPFSRRYFGADDAPRLFTYAHEWQRAHAADARGTA
AEPLAPWQPEAPLALDALQSFLARPVRHFFNQRLKVYFGGEEADTLDDEPFALDGLERYQ
AIQGVLQAALAGDGGAASRAVVDAVQRLGAQGLLPTGGFGELWQESIAREAGTLAAHWHA
ADGRWPRVDDKYELRHEADGLPLEDWLSDLRRPDPAQAGIDYVRLELIQGPLLARPRGRR
LDKLVAAWVAHLFAHAGGLRVQTRVIAMDAQPYFPALDPAQARALLDELLDALRHGMRAP
LPLARKTAFAWLQAEHDGRDAAAAARQCYDRDDSGQRHAEVDEDTYLQRAWPTLQAMLDA
GFERWLPLYRALAQNVRWEDGT