Protein Info for ABZR86_RS07475 in Dyella japonica UNC79MFTsu3.2

Annotation: helix-turn-helix transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 PF02311: AraC_binding" amino acids 21 to 158 (138 residues), 40.4 bits, see alignment E=3.7e-14 PF00165: HTH_AraC" amino acids 172 to 205 (34 residues), 39 bits, see alignment 1e-13 amino acids 218 to 252 (35 residues), 26.7 bits, see alignment 7.3e-10 PF12833: HTH_18" amino acids 177 to 253 (77 residues), 82.8 bits, see alignment E=2.7e-27

Best Hits

KEGG orthology group: None (inferred from 57% identity to pfl:PFL_0792)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2FVM7 at UniProt or InterPro

Protein Sequence (266 amino acids)

>ABZR86_RS07475 helix-turn-helix transcriptional regulator (Dyella japonica UNC79MFTsu3.2)
MRQTRVNHYEDIPRAIVATGNDYPARFVLPSHAHKRHQLLYAATGVVKTITPEGSWIVPP
RRALWIPAGVMHEVHMDGEVSTRSAYLQPDAARDLWRHCQVIAVSPLLHELLEAAVDLPA
EYALDSRDGRLMALLLDEIRAMPTLALNTPLPAEPRLYKLCRAMLDAPALDLDIDAMAAK
AGMSRRHFTRTFRQQTGMSYAAWRQQACLLAALTRLGRGQSITDVAVELGYGSASAFTAA
FRRVLGEPPSRYMAGEQRPRAKGAPI