Protein Info for ABZR86_RS06945 in Dyella japonica UNC79MFTsu3.2

Annotation: RHS repeat-associated core domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1583 signal peptide" amino acids 1 to 46 (46 residues), see Phobius details PF20148: DUF6531" amino acids 240 to 314 (75 residues), 49.7 bits, see alignment 6e-17 PF05593: RHS_repeat" amino acids 708 to 741 (34 residues), 24.6 bits, see alignment (E = 4e-09) amino acids 727 to 759 (33 residues), 25.5 bits, see alignment (E = 2.1e-09) amino acids 778 to 814 (37 residues), 40.7 bits, see alignment (E = 3.6e-14) amino acids 799 to 828 (30 residues), 25.5 bits, see alignment (E = 2.1e-09) amino acids 965 to 999 (35 residues), 22.7 bits, see alignment (E = 1.5e-08) TIGR01643: YD repeat (two copies)" amino acids 778 to 814 (37 residues), 29.4 bits, see alignment (E = 8.1e-11) amino acids 799 to 832 (34 residues), 19.3 bits, see alignment (E = 1.2e-07) TIGR03696: RHS repeat-associated core domain" amino acids 1370 to 1445 (76 residues), 62.7 bits, see alignment 3.7e-21 PF13539: Peptidase_M15_4" amino acids 1506 to 1556 (51 residues), 28.2 bits, see alignment (E = 3.3e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1583 amino acids)

>ABZR86_RS06945 RHS repeat-associated core domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MISLVRAPLRAISMRSIRERLYRFFKQPAFALGCIAMLAVSAAHAQDYSGNPAVAPRLAQ
RQAAASAALTATVNVTGLWHGNLQAPNDATAAAWEEEFDLRQDDSGNVTGTRKTTPQTNG
TNWYIWSVTGTVSGNTLTLNDTTLVARGGGTNTPCQDTTTVNVTADGASFSGTWTAKTGC
SPGTVSATRYGGDVARNLGSGALCDGGLGLLGGGSGSGSGASGNANGLSCPEKMGAARLG
DPIDAGTGNYYLQEDDYTASYWLTFRRFYNSSGAVAPANLGFRWRHSFDRSLRLIGTPVA
TIIMLRPDGKQENFTKPGNAWVTDLPVDQLTEIRDGQGVVTGYSAFIGGSRETETYDSTG
KLIQVLGQDGQGITLTYSTTTSTSYPRLGLLKTVTDSKGRKLTFFYDSSARLNSITLPDN
KSLYYYYVSASSNIAQVTYPDARYRLYGFNEAAYIGQTSLPNAMTGIQDENGARYESITY
DNAGRATSSTFVGGVGATKIAYNADGSASVTYPLGNTVKIGMSSVAGLVRVSSMDAPCAP
DCGQHWKSRTYDSRGFPATYVDFKGVTTQVTYDEYGLLLQTIEAVGTTEQRTTTTVWDKQ
IRRPLSRTVLDSQGHAVASTGWAYNALGQVLAYCEIDPQAPSAAGYTCSNTGTAPEGVRR
TTYTYCTAVDTTQCPLVGLMLTATSPRIDVAQTTTYQYYLTDGTQWQHGDLKSVTNALGQ
VITFAAYDKNGLPTRTIDPNGVITDLSYNPRGWLLKRTVRANADGSASSNDAVTQFGYSR
AGNLISVTDPDNVTITYGYDPSHRLTSIRNGNGENVTFTLDAAGNRTKEEVKGSNSVVTR
SLTRSYNALGQLTGVQDALNRSVLSATYADSYDANGNLVHAADGLNVQLKRDYDALNRVI
ATTDDFNGSDQATRNTQTIYQYDALGRMAGAGDPDALNTLYDHNAFGDQVGLHSPDTGNS
SANVDKAGNATSVTDARGIQVNQTFDALNRRTSASYPSTSDNIAWFYDEPNSVTGCTGSY
PIGRLTRVVEANVTTIYCYDKRGNVVRKSQTQGTQTDVVAYTYTLADRLAALTYPSGTMV
AYKRDIVGRVQSLAVTTSGTTWTIVDSVNYMPLGPIASYMLGKIGFSQLITRTYDANYAL
TDISSSSLNLHFARDVMGNITALGSAAGANPATETYRYDALYRLNAINDAAGVAIEAYTY
NKTGDRLSKSASGLATGTYGYQSGTHWLTSIGSSARTYDANGNITGNSTGGDAFGYGYNG
RNRMTVVQRNGQTVANYSYNAMGQRVAKAVMAPQAANQRFAYDEGSQLLSEYGTTNRDYI
WMGGLPVAVVDGVGVAAKLSYVTADELGTPRVIKDDTGAVQWQWPYQGNAFGEMQPVSAT
GYAFNLRLPGQYVDFERGLAYNTNRDYEPATGRYVQSDPIGLAAGWNTYAYAAGDPLTQF
DFFGLALTPVDLPGLGATYLDDSFSPNVERFIANASAHGVELHFNSAYRTPAHQAQLHND
PNAITPADQSLHSCGFAVDVNYSTLPAAQQQIIREAAQSAGLSWGGAFRTPDPPHFFIEP
SIDRATAIDNATRDYLRLTGQQH