Protein Info for ABZR86_RS06580 in Dyella japonica UNC79MFTsu3.2

Annotation: peptidoglycan DD-metalloendopeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF01476: LysM" amino acids 55 to 97 (43 residues), 56.1 bits, see alignment 2.8e-19 PF01551: Peptidase_M23" amino acids 235 to 326 (92 residues), 103.3 bits, see alignment E=6.5e-34

Best Hits

Predicted SEED Role

"Lipoprotein NlpD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1Y7L7 at UniProt or InterPro

Protein Sequence (333 amino acids)

>ABZR86_RS06580 peptidoglycan DD-metalloendopeptidase family protein (Dyella japonica UNC79MFTsu3.2)
MKGHCRYFAPAALSLLLAACVSPRSSVVFEPAAGTQGRTVAPAPVARAAAPGGSYRVVKG
DTLYSIAFRNGVDFRDLASWNGIAAPYTIWPGQTLKLSASGAAAPAASHAVVATSPKPAA
NPPARTPAGAGFETVPANPAATAETPAPAPAAPVKPAPATATVSAPAPASTAVTVVPVAG
APATAHTAAAAATPPPAPPQAVAQGATRASAGINWRWPADGSLGKRFQSGDAIPGIEILG
KSGDPIRAAADGVVVYSGNGLVGYGELVIIKHNDSFLSAYGHNSKRLVKEGQRVSAGQQI
AEMGSTGATRDELQFQIRRDGNPVDPMGYLPSR