Protein Info for ABZR86_RS06385 in Dyella japonica UNC79MFTsu3.2

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 19 to 471 (453 residues), 321.6 bits, see alignment E=4.2e-100 PF02321: OEP" amino acids 69 to 261 (193 residues), 65.1 bits, see alignment E=3.7e-22 amino acids 291 to 469 (179 residues), 62 bits, see alignment E=3.4e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1Y427 at UniProt or InterPro

Protein Sequence (502 amino acids)

>ABZR86_RS06385 efflux transporter outer membrane subunit (Dyella japonica UNC79MFTsu3.2)
MIASPLKRPFGRRAALVVAVAVALAGCAIPAKVQHPTLRDEVPLAGLEAPARAGWPAADW
WRQYQDPQLDDLIERAMKGSPDLAQAQSRLESAQQSIRIAAAQAGLSINGSAQVQRQRMS
ENGLIPSKFLGFTWYNQGDLGVQAQYDFDWWGKRRAQIDSAVDQARAAEAQRSAAALAIQ
NAVADTYFGWLADEARIDVARKQVDTQNQYVRVEDLRVRQGVDLPDDAQKARIQQASARE
LLVALESSAKIRQSALASLLGVAPAELPTLTPRALPSIDGGLPANIGTDLIARRPDIAAS
RWQVEAALKQTDAARAEFFPDISLSAMAGLSSIDLDKMFNASSRVFALTPALHLPIFNSG
LLQANFRASKAQLDAAVAQYNGTVLSAARDVSLQSLTAQQLAARRQEQAAQIAANQSLLA
SAQARARQGVRDIRESLGAQGQLLQANDDALSLQAQALSTDLSLIKALGGGYRVAGDAQP
ASSSSSNSTSTAISGDAAHERH