Protein Info for ABZR86_RS06235 in Dyella japonica UNC79MFTsu3.2

Annotation: recombination mediator RecR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 TIGR00615: recombination protein RecR" amino acids 2 to 194 (193 residues), 243.7 bits, see alignment E=5.6e-77 PF21176: RecR_HhH" amino acids 6 to 49 (44 residues), 81.1 bits, see alignment 9.7e-27 PF02132: RecR_ZnF" amino acids 52 to 72 (21 residues), 29.6 bits, see alignment (E = 1.2e-10) PF01751: Toprim" amino acids 79 to 160 (82 residues), 43.7 bits, see alignment E=6.6e-15 PF13662: Toprim_4" amino acids 79 to 169 (91 residues), 81.8 bits, see alignment E=8.5e-27 PF21175: RecR_C" amino acids 171 to 194 (24 residues), 48.5 bits, see alignment (E = 1.3e-16)

Best Hits

Swiss-Prot: 72% identical to RECR_XANAC: Recombination protein RecR (recR) from Xanthomonas axonopodis pv. citri (strain 306)

KEGG orthology group: K06187, recombination protein RecR (inferred from 72% identity to xoo:XOO1066)

MetaCyc: 58% identical to recombination mediator protein RecR (Escherichia coli K-12 substr. MG1655)
RXN0-2606

Predicted SEED Role

"Recombination protein RecR" in subsystem DNA-replication or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1Y696 at UniProt or InterPro

Protein Sequence (197 amino acids)

>ABZR86_RS06235 recombination mediator RecR (Dyella japonica UNC79MFTsu3.2)
MSKLLTDLIEALRCLPGVGGKSAQRMAFHLLERERERGLRLAQVLEQAMQRIGNCTRCRN
FSEEPVCPICASSSRDRQVLCVVESPTELAAIEQATGYRGQYFVLLGRLSPLDGLGPEEL
GLDLLTERLAEGEIEEMVIATNPTVEGEATAHYLAQLARAAKVKPTRLAHGVPLGGELEY
VDRSTLAHAFGSRQPLG