Protein Info for ABZR86_RS05770 in Dyella japonica UNC79MFTsu3.2

Annotation: fimbria/pilus outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 860 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13954: PapC_N" amino acids 37 to 175 (139 residues), 153.8 bits, see alignment E=4.8e-49 PF00577: Usher" amino acids 191 to 744 (554 residues), 530.8 bits, see alignment E=7.3e-163 PF13953: PapC_C" amino acids 754 to 816 (63 residues), 52.3 bits, see alignment 6.3e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1XXL2 at UniProt or InterPro

Protein Sequence (860 amino acids)

>ABZR86_RS05770 fimbria/pilus outer membrane usher protein (Dyella japonica UNC79MFTsu3.2)
MCLLCLLCALAGAGPWAAQAAATGGAPAGGAPVEGLEFDPIFLSGGAGSADLERFRSGPR
VAPGTYRVDLYLNNELHGSETLRFEAPAPGADVAACLSGELLTRLGVDLPQAAQSAACID
LAGLIPAAAVRFDSGEQRLDISVPQASLRKQARGYVDPKRWDDGITAATLSYNFNTSQRW
SRGRRARDGYVGLVGGLNLGGWQLRHQSSLQWSSDGRGIHWQNLRNYAQHDLSSLRSRMT
VGDFVTGGDLFDSVALRGVQVASDDQMLPDSQRGYAPVVQGIAASNATVTIRQNGYVVYE
TTVAAGPFRIDDLYPTGYGGDLEVTVREASGQEQRFSVPYAAVNRLLRPGNSRYSVSLGQ
YRSAEGDVHPMVWQGTLQRGLSNRVTAYGGATLTKDYQALQLGAALNTRLGAFGLDATHA
RARLPAVALEAQPKTGDSAAKPQRRRTRQGNSFRVTYSKAINATGTNVSVAAYRYSTGGY
LSLSDAVRAQGIGMTGVWRQRSSAQVTISQPVGKGSLYLTGSAQNYWGRGGMDSQFQLGY
SGSSRWFNYSVAASRARNGDGRMDNRVFVSLSIPFGGGSMDVGAGTGRDGTDGRISFNRT
VGDRAAYGASLGRDAQGAVSWNANGTYRSPLAVLTGSAAGGAGYRQASFGATGAAVIHAG
GITLGQSMGDTIGLIKAPDAAGAAVSMSPGSKVNRAGFAIVPYLTPYRRNSIELSPQGLS
SDVELLDGSQEVVPRNGAVVMASFATRKGRVAVIDLKPVQGLTIPFGSDIVDSEGRVVGV
VSQGARALVRGIAEEGRLTVRMDEGRSCSFHYRLPPSDPKHSGARDYTYLEAGCDITAKW
VEADVLKTRFPLVTAVGSKK