Protein Info for ABZR86_RS05645 in Dyella japonica UNC79MFTsu3.2

Annotation: molecular chaperone DnaJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 TIGR02349: chaperone protein DnaJ" amino acids 5 to 344 (340 residues), 432.8 bits, see alignment E=6.2e-134 PF00226: DnaJ" amino acids 5 to 67 (63 residues), 91.2 bits, see alignment E=5.4e-30 PF01556: DnaJ_C" amino acids 116 to 328 (213 residues), 175.7 bits, see alignment E=9.7e-56 PF00684: DnaJ_CXXCXGXG" amino acids 143 to 202 (60 residues), 52.8 bits, see alignment E=5.9e-18

Best Hits

Swiss-Prot: 65% identical to DNAJ_STRM5: Chaperone protein DnaJ (dnaJ) from Stenotrophomonas maltophilia (strain R551-3)

KEGG orthology group: K03686, molecular chaperone DnaJ (inferred from 65% identity to smt:Smal_1601)

MetaCyc: 60% identical to chaperone protein DnaJ (Escherichia coli K-12 substr. MG1655)
1.8.4.-

Predicted SEED Role

"Chaperone protein DnaJ" in subsystem Heat shock dnaK gene cluster extended or Protein chaperones

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1XQ40 at UniProt or InterPro

Protein Sequence (374 amino acids)

>ABZR86_RS05645 molecular chaperone DnaJ (Dyella japonica UNC79MFTsu3.2)
MSKRDYYEILDVERTVTEVELKKSFRRLAMKYHPDRCPDDPHAQEKFKEAKEAYEVLSDP
QKRSMYDQHGHAAFEGGMGGRGAGGFGDMGDIFGDIFGDIFGMGGGRGRSRRGADLRYMM
ELDLEEAVFGVEKNFQVPTQVSCHHCNGSGSEDGKTVQCRTCNGHGRVRMQNGIFSIQQS
CPHCGGAGQTIEKPCKPCRGEGRLEETRTLSVRIPAGVDTGDRIRLTGQGEAGGAGAEAG
DLYVEVHVREHAIFQRQGNDLYCELPIRFGQAALGDELMVPTLEGEVSIQVPPETQTGQQ
FRLRGRGVKSVRSGRTGDLICHVVVETPVRLTRQQRELMEQLEATFKHEDADQHTPRAKT
WVDGVKQFWSRVTS