Protein Info for ABZR86_RS05480 in Dyella japonica UNC79MFTsu3.2

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 64 to 86 (23 residues), see Phobius details amino acids 107 to 136 (30 residues), see Phobius details amino acids 151 to 172 (22 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 223 to 245 (23 residues), see Phobius details PF12730: ABC2_membrane_4" amino acids 8 to 188 (181 residues), 64.6 bits, see alignment E=5.9e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1XLM8 at UniProt or InterPro

Protein Sequence (253 amino acids)

>ABZR86_RS05480 ABC transporter permease (Dyella japonica UNC79MFTsu3.2)
MSALVRALRAERIKLRHTLAAWMVPLAPGVILLLSLVQLGFAHVPPPGPTDPMEAWKHFC
QGMFTLWLFLMLPLFITLQAALLAGLEHGHHQWKHLLALPVPRRTHFMAKLCMLMAMVAA
STLLLAVATPLVGWVIMQLNPAQGLTGSPPWAWLVSRALASIVAAGALMALQGWVALRWQ
SFTVAVSVGTAGMVSGFLIGQSDRLGHWFPWSMPVQVFLRDGVHLWFVLVAGLVAGVAIA
GFALWDCSRREYD