Protein Info for ABZR86_RS05435 in Dyella japonica UNC79MFTsu3.2

Annotation: outer membrane protein assembly factor BamB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR03300: outer membrane assembly lipoprotein YfgL" amino acids 5 to 393 (389 residues), 392.6 bits, see alignment E=7.1e-122 PF13360: PQQ_2" amino acids 44 to 96 (53 residues), 27.1 bits, see alignment 6.7e-10 amino acids 114 to 322 (209 residues), 176 bits, see alignment E=2e-55 amino acids 316 to 393 (78 residues), 25.1 bits, see alignment E=2.6e-09 PF13570: PQQ_3" amino acids 44 to 86 (43 residues), 25.8 bits, see alignment 2.2e-09 amino acids 141 to 179 (39 residues), 34.9 bits, see alignment 3e-12 amino acids 181 to 225 (45 residues), 20.7 bits, see alignment 9.1e-08 PF01011: PQQ" amino acids 68 to 93 (26 residues), 21.1 bits, see alignment (E = 4.1e-08) amino acids 125 to 158 (34 residues), 25.4 bits, see alignment 1.7e-09 amino acids 162 to 193 (32 residues), 24.5 bits, see alignment (E = 3.3e-09)

Best Hits

Swiss-Prot: 34% identical to BAMB_SHIDS: Outer membrane protein assembly factor BamB (bamB) from Shigella dysenteriae serotype 1 (strain Sd197)

KEGG orthology group: None (inferred from 40% identity to sml:Smlt2059)

Predicted SEED Role

"Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1XKL0 at UniProt or InterPro

Protein Sequence (398 amino acids)

>ABZR86_RS05435 outer membrane protein assembly factor BamB (Dyella japonica UNC79MFTsu3.2)
MKRALLVGLVSMATLAGCHSFKKENVQPPTPLDKDFKPTAQVSRLWTSSVGKGAGESGLR
LRPAFADGVLYVASTDGKIEALDASSGKTLWSKSSSTKGWFGWGDKKRKDAFYAGGPGVS
GDLLAIGTLDGHVYGINAKDGSPRWESTLSSEVLAAPAVVGGLVIVRTGDGRLYGLDSSS
GERRWAYDQGNVPLLSLRGNGPLLAANGVIFFGSDNGKLVALRLDNGEKLWEQNMASGEG
RTEIDRLNDADGVIVLDGSTLYGAAYHGNLVAVDGPSGRPLWSRPFSTFTSVDVAGNALY
GVNEDSQVWAFDKSGGADMWKNDKLKYRWLTAPSVQGNYVVAADSEGYVHWLQTSDGALA
ARERLSKKPIRAQPLVVGDTVYVEDVKGRIGAYRLGGH