Protein Info for ABZR86_RS04775 in Dyella japonica UNC79MFTsu3.2

Annotation: c-type cytochrome

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 111 PF00034: Cytochrom_C" amino acids 12 to 110 (99 residues), 36.9 bits, see alignment E=3.8e-13

Best Hits

Swiss-Prot: 45% identical to CYC2_AGRTC: Cytochrome c2 from Agrobacterium tumefaciens (strain II Chrys)

KEGG orthology group: K08738, cytochrome c (inferred from 61% identity to xac:XAC1684)

MetaCyc: 42% identical to c-type cytochrome protein (Caulobacter vibrioides)

Predicted SEED Role

"Cytochrome c2" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1XEM6 at UniProt or InterPro

Protein Sequence (111 amino acids)

>ABZR86_RS04775 c-type cytochrome (Dyella japonica UNC79MFTsu3.2)
MTASPAFAGDASAGSDVFKSECAECHSIKEGRNKKGPSLFGVVGRKAAAVPDYEYSDALR
AQSAWVWTPEQLHSYLGQPAKRANPGTKMKYDGLNDPKQLDDLISYLGTLH