Protein Info for ABZR86_RS04620 in Dyella japonica UNC79MFTsu3.2

Annotation: PAS domain-containing sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 627 PF13426: PAS_9" amino acids 8 to 110 (103 residues), 38.5 bits, see alignment E=4.1e-13 amino acids 136 to 238 (103 residues), 49.7 bits, see alignment E=1.3e-16 TIGR00229: PAS domain S-box protein" amino acids 8 to 117 (110 residues), 47.7 bits, see alignment E=7.9e-17 amino acids 119 to 246 (128 residues), 70.6 bits, see alignment E=6.7e-24 PF08448: PAS_4" amino acids 8 to 112 (105 residues), 32.9 bits, see alignment E=2.3e-11 amino acids 136 to 241 (106 residues), 35.9 bits, see alignment E=2.6e-12 PF00989: PAS" amino acids 8 to 107 (100 residues), 26.7 bits, see alignment E=1.6e-09 amino acids 133 to 236 (104 residues), 40.3 bits, see alignment E=1e-13 PF00512: HisKA" amino acids 263 to 326 (64 residues), 34.8 bits, see alignment E=4.9e-12 PF02518: HATPase_c" amino acids 369 to 487 (119 residues), 68.7 bits, see alignment E=2e-22 PF00072: Response_reg" amino acids 511 to 617 (107 residues), 46.4 bits, see alignment E=1.4e-15

Best Hits

KEGG orthology group: None (inferred from 57% identity to msl:Msil_3591)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1X775 at UniProt or InterPro

Protein Sequence (627 amino acids)

>ABZR86_RS04620 PAS domain-containing sensor histidine kinase (Dyella japonica UNC79MFTsu3.2)
MDPVIDYAIYMLDTEGAVRSWNQGAERCEGYGVRDILGAPFETFFVPEDRALGLPAEILV
KALQQGRFETECWQLRKDGSRYWAQVVIDAAYGDDGARVGYAALTRDLTAAKQAAENQRR
SEEQFRILVQGVTDYAIYLLDPEGKVSSWNAGAQRIKGYLPREIIGKHFSTFYTDEDRER
ELPARGLATAARLGRFENEGWRVRKDGSRFWAHIVIDRILDDRGRHIGYAKITRDITAKR
QAEQELAQTREALFHAQKMEAVGQLTGGVAHDFNNLLMAIIGNLELLIRRLQHDPQSLAL
LNNALSGAERGATLTRRMLAFARRQELKPAALDLRPLTRNLVSLMERSLGPQVGVDLAFP
ISLERVMVDANQFELAILNLVMNARDAMPAGGRITLAAQSVQVGEGHAVGLPSGRYVCMS
VTDRGQGMDAATLERATEPFFTTKGVGKGTGLGLSMVHGLAEQSGGRLVLHSEAGKGTRA
EIWLPVAPAEAPSQTPPSPMDEPSRNGQLRVMLVDDDPLILATTAAVLEDMGHLTYEKSS
ANEALEALFGGVEVDLLITDQMMPVVPGHQLLAQVRAQWPQLPAILASGYAETPKDLPGN
VVRLAKPYGRAELMQAIDRAVLMHMTA