Protein Info for ABZR86_RS04105 in Dyella japonica UNC79MFTsu3.2

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 transmembrane" amino acids 22 to 41 (20 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 88 to 106 (19 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 144 to 169 (26 residues), see Phobius details amino acids 180 to 203 (24 residues), see Phobius details amino acids 232 to 251 (20 residues), see Phobius details amino acids 263 to 282 (20 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details amino acids 317 to 336 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 58 to 328 (271 residues), 138.8 bits, see alignment E=1e-44

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 75% identity to psu:Psesu_0886)

Predicted SEED Role

"Putative sugar ABC transport system, permease protein YtfT"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1WVY6 at UniProt or InterPro

Protein Sequence (351 amino acids)

>ABZR86_RS04105 ABC transporter permease (Dyella japonica UNC79MFTsu3.2)
MAASSAISSRWGRGLRRCLAHPLLWPLLTLILLLAGNGLFNPGFLALQWRDGHLYGNLID
IAHRAAPLALVSLGMTLVIALRGLDISVGAVLAIAATVAAWTIGHVSNDGLLPLWLAIAA
ALAAGALCGLWNGWLVVGAGMQPIVATLILMVAGRGIAQSISGGQILTLYYAPYSFLGNG
FVLGLPFSLFVVAAVFALLQLALRKTALGLFVRAIGHNPQAAHVAGVRARAITLGAYVFC
GIAAALAGLLVSSNVNSADANNAGLLLELDAILAVALGGSLLGGGRFSLAGSLLGALIIQ
ALTTTIYAIGVPPQVNLAVKAVLVFAVMLLQSPLCRGQLRALLRLRAERRA