Protein Info for ABZR86_RS03605 in Dyella japonica UNC79MFTsu3.2

Annotation: autotransporter domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 961 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR01414: outer membrane autotransporter barrel domain" amino acids 640 to 961 (322 residues), 86.5 bits, see alignment E=9.8e-29 PF03797: Autotransporter" amino acids 685 to 940 (256 residues), 154.7 bits, see alignment E=2.1e-49

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1Z9A1 at UniProt or InterPro

Protein Sequence (961 amino acids)

>ABZR86_RS03605 autotransporter domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MKRSRRIHRNTLSMAIALAATGTGYSNVGSAMQFHRHGNQLIVTGETEQDDPDILISWLD
RAVAISNPITTVVFRNGPGGVAEAGLGLGRIIRERNLNTIFDGGCYSACAASFLGGIQRS
MTQFDLPHYFGTETILGIHGTSTDGQVDPPHEQDEYLDYLRGMLGQEGEHAMLRIIQSHY
ELGNSGGFLRYYDPAKNLQPARFCPTEDETSSGGCIDHPRDATIRTDTLVNQAGYATVND
ILNVKNRVAGNINPHYGDDSLHDAWGVIRLRPGSHWLLDETSSADVIWVNGGTLQLDRNG
NLGSSHALVADRDGIVALRSAILDTQVRVADGAILEGYGTVTRPMQFAKNGLFAPQGIVI
RSYALKSVEGVTMPFTTGASVLLEEGSATLFTVSADDRQPGLTLEQRDVVVIVPDEDQPE
IRAGASRSALLIHPSATLGLDIHPGYYVAGGESLLVDTVIDRTPLTGFVAGVCSEPDAAC
TLDPVAPAVNPFILGSFRQALNKDEAGKVVDLTEPGAVVQARKNSLLSFMVQQSEDKIAL
IANPAFDDTSIFANRHSGDGLGAALRAASHRSATSLAPLLGALQFADKNIVKAQSGALRG
DGYATLRSADVNLVREFGGVVDQHLQNVRRGQDEQSAAFAGSLLSASPAANRNTIAGNMS
HMLRRLAGAPDEKPAQADGPDGWRFWGRGFGTTGRIDAQEGVAGMRQNSSGLLLGMERRF
AGGKILLGGSLGFGSMSAKASNKQFRADVGAVDASVYIDARYGAGYVNGTLRYTRLDHEA
TRSIGGIAGLGAMHKASYSNHAWSVRLEHGLQWSDKHGTVWQPLLPVLDYVRLADQRFAE
TGGPAALQGRGGSHDSLRGGVGLRVWRSFQSSRSGVLTPHAQLLFAHEFKDRDGRLQASF
AQEPTLPFKVIGQDTGRNTVAWNLGVGSQMNARTSLALDYVGERSSGRTQHGLMLGLAHK
F