Protein Info for ABZR86_RS03105 in Dyella japonica UNC79MFTsu3.2

Annotation: response regulator transcription factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF00072: Response_reg" amino acids 27 to 118 (92 residues), 50.6 bits, see alignment E=2e-17 PF00486: Trans_reg_C" amino acids 153 to 226 (74 residues), 41.5 bits, see alignment E=1.2e-14

Best Hits

KEGG orthology group: None (inferred from 32% identity to pvi:Cvib_0888)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1ZQ99 at UniProt or InterPro

Protein Sequence (236 amino acids)

>ABZR86_RS03105 response regulator transcription factor (Dyella japonica UNC79MFTsu3.2)
MREAVKRQVAIVTADAGLRGKPALAQLHESGFAAVAMGSAADLYRAWVGQLFDAVVVDVA
LPDEHGLTVVRHLRHLSRTGIVLLTGFGAKEGALEGLHAGADMCLPKPVDAALLTAALTR
LAERLDPEPQPLARSWHFGADDWQLWAPNGRVAPLSFAERQVLRHLAASPEVPVSREQLL
RLLETAEQEPRTARLDLLVHRLRRKVEQRTGFELPLTYMRGIGYLLDLEKAAPRAR