Protein Info for ABZR86_RS02850 in Dyella japonica UNC79MFTsu3.2

Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1169 PF13175: AAA_15" amino acids 1 to 144 (144 residues), 33 bits, see alignment E=1.3e-11 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1159 (1158 residues), 1044.1 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1152 (1150 residues), 219.4 bits, see alignment E=1e-68 PF13476: AAA_23" amino acids 6 to 231 (226 residues), 65.8 bits, see alignment E=2.1e-21 PF13304: AAA_21" amino acids 26 to 102 (77 residues), 31.1 bits, see alignment 5.9e-11 PF06470: SMC_hinge" amino acids 526 to 616 (91 residues), 31.9 bits, see alignment 3.9e-11

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 60% identity to psu:Psesu_1738)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1ZSS9 at UniProt or InterPro

Protein Sequence (1169 amino acids)

>ABZR86_RS02850 chromosome segregation protein SMC (Dyella japonica UNC79MFTsu3.2)
MRLTTIKLAGFKSFVDPTTLHLPTNMTGVVGPNGCGKSNIIDAIRWVMGESAASRLRGDS
LTDVIFSGSNSRKPVGQATVELIFDNSDGTIQGEYGQYAEISVKRQVTRDGQSAYFLNGA
RCRRRDITDLFLGTGLGPRSYSIIEQGMISQIVEAAPEELRVHLEEAAGISKYKERRKET
ESRIKSTRENLDRVRDVRDEVDKQLEHLNRQARAAERWKALKEEQTRKEAELRALEYRGL
KSQHDGEGAGLSAAEIEIEKRIAGQRNVEAQLESVRERHTAASEHLGQVQGEVYKVGAEI
ARVEQQVRFNRETADRLQRAQAEAEREHEELAAHITTDREQTETLRLALAEGEPRLEALQ
QMQEDTGDAQRDTEAKLSDWQQRWDVYTRTAGEAARAAEVERTKLAYLDRQSIDLAKRRE
ALESEQKATDIEALDASFEQLQGEHETQRERLETLGSLLDQHKLGHEKVLDEERQVQSAL
NEARQQLQSARGRQSSLEALQHAALGQEESAASGWLARLGLDKSRRLGESLQVEAGWETA
VETALAGFLDSVLVDGAHDYAKDFGDLKNADLALLDAAEGGANTAGTLAAHVRGPAAAIS
ILSHVLTAEHLDEAHQRVAGLSALAPYQSVMTRSGEWLGPGWARVRRAQGNQVGVLARER
EMRLLAEQIATLEARIEEATGQLDDLRTSKFEAERARDDAQRELYNAHRRQSELAGQLQS
HRGKMETARARAEKVSGELGEIISQLDELQTQTRDARARLDESVNHMGDLEDQRRELENE
RRALLESREEARMNAREAADQAHALALSMESKRSALASLEQALARMDTQIRQIASRRGEI
EEQLAAGSDPIAELEAERQTYLDQRLLVDKQLVEARRAVEDCDAEFRRLEQERQRIEQGL
NTLREQLSQKRLAAQALELRAQQLADAIAASGLELEPLLAELPEDADASQWRGSLTDLGQ
KIQRLEPVNLAAIQEHAEQSERKTYLDNQLADLTSAMETLEGAIKKIDRETRQRFKETFD
RVNAGVQELFPRLFGGGHAYLELTGDDLLDTGVAIMARPPGKRVSNISLLSGGEKALTAV
SLVFSIFGLNPAPFCLLDEVDAPLDEANVGRFSNMVKEMSEKVQFIFVSHNKATMEAASQ
LCGVTMREPGVSRLVQVDLAEAAKLAGAA