Protein Info for ABZR86_RS02640 in Dyella japonica UNC79MFTsu3.2

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1210 transmembrane" amino acids 406 to 431 (26 residues), see Phobius details PF06791: TMP_2" amino acids 358 to 546 (189 residues), 125 bits, see alignment E=3.6e-40 TIGR01541: phage tail tape measure protein, lambda family" amino acids 847 to 1152 (306 residues), 186.1 bits, see alignment E=4.7e-59 PF09718: Tape_meas_lam_C" amino acids 977 to 1050 (74 residues), 51.4 bits, see alignment 9e-18

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I1ZXJ2 at UniProt or InterPro

Protein Sequence (1210 amino acids)

>ABZR86_RS02640 phage tail tape measure protein (Dyella japonica UNC79MFTsu3.2)
MSTEGESIGTARLDVVVDTAQFDTAIVSAERRVSSMSQSAQAAYNQLSSAEKRRVDGLIK
QADTLNLTRQQQILYNAAIKGIPTSILDELKAKFVAAEVASANAASGAKALGDALKGSSL
SDAQLLKANQALAAFRVNVEAANAANLKAPSLGDQQIFKANQALVAYRANIEAASAANLK
APSLGDAQIFKANQALATYRANAEAARDASQALAESDAAQTARIREMVQASTARTSAEQA
AIAAKQKSVSASDLERAATDKLRKSADDRNSIAQRAQAILAAEARSRQQSTSSVQAEAAE
LQKLLGKIDPVSSALDKLDRMEGQLRASRAKGLISKDDYDAYAAKIAKTREEVTKADAAM
GHFTFSSAGVRREIGVMVGELARGNFSNLEGSLITLANRAGVLSAAFSPIGALVGAAVLA
IGGLAAAAIAGSLEQDKLNASIIATGNYAGVTAGQVNAMAEQLGRTTGGTGKARQELELL
VASGKVTGDRLAEAAQGAADFAFVTGESIDKAVEHFVKLQDDPVKSIKGLDEQYHFLTLS
QYENIKALQEQGDAEAAAAISQTAAAQAFAQRAAQVRSELGSIQRAWISVREAASEGWDA
IKGVGRPTSLQEDAAHYKELADTYKENLMAAFGQSDSQAEANPVVQRNRQLQNSLAAGAD
LERWAAQTEADNQKIRTEAKKASDVMDGFLKSAKADKDKAAEYAAVKKATATLIAANPAD
RATYEKNERDALKEIDKKFTDRSAASATKAVNTAEESGQVKAFKESLAQLDDAFKNSQRE
LDAARKSGLSSEAQYYKESQDLLWKNEAAQITAIQAEIDRLEKRKVAGADGIKNTTRIAD
LQAQASKIEADAISKSNALGEQQRASYEKRQQAIDAYRLALDKTNDSLELQVNAEIARIG
MGDRQYTIQQRVNQAYQEQAEKLQDLALKRQAGSRGEVGGLDQDQYEADVAALQSATERR
VAIIRDGYERMAAAESDWRNGAERGLEDWVQQAGNSSSQVASFTTNVLDSTTSFLVDRLT
SKKQTLKAWVADVLKDLATIELRVAASRLLSSIVGAFTGMPSTGVALSGPASYTGQGVAG
DIANFAFNAKGNVYSSPDLSAYSGKVVNRPTVFAFARGAGVMGEAGPEGILPLTRTSGGK
LGVHAVGGGGDVVFNQTVNFNGDGSVTEQTTGGGQGELGQQLLTRMRDTARQVVVEEQRP
GGILWRMQRA