Protein Info for ABZR86_RS02520 in Dyella japonica UNC79MFTsu3.2

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 PF00176: SNF2-rel_dom" amino acids 54 to 331 (278 residues), 68.9 bits, see alignment E=4.2e-23 PF00271: Helicase_C" amino acids 396 to 499 (104 residues), 35.6 bits, see alignment E=9.6e-13

Best Hits

KEGG orthology group: None (inferred from 57% identity to gau:GAU_2235)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2A034 at UniProt or InterPro

Protein Sequence (583 amino acids)

>ABZR86_RS02520 DEAD/DEAH box helicase (Dyella japonica UNC79MFTsu3.2)
MNYGSVQYLSGGWVVTCEPQVRARLKRVFPRVPQHAAEHLLLSASPENSRELSWFLTRYP
MSVTDGDRSLMDQLANQHVEMEASLQELLAGRRPIPQFELAKPPRDYQRYAAAQMDIRGG
LLLADDLGLGKTVTGICPMAAPANLPAVVVYPAALPNHWPEKLAEFAPALRVHRIRKGKP
YPLVRQRGQRLPDLWDTIPDVILVSYHMLRGWAETLGELVQYAVFEECQQLRSPGTDIYS
AAMYLAKRARLRMGLTATPIYNYGTEFYHVVNPLIPDCMGTYDEFVREWCITAPGEKARL
KDAEQFGTYLRREGIMLRRTRKEVGRELPALSKVPYEIEADERVLDSIAGDAAALAKIIL
SANERYRGEKMQAGGEFDRLVRQATGIAKAPHVAEFVRLLVQSGQQVLVFGWHREVYAIW
QEKLAEYNPVMYTGSESPSQKQAAKDAFVAGQSKVMLISLRAGAGIDGLQHVSSTVVFGE
LDWSPGVHEQCIGRVHRDGQTEPVMAYFLISDNGSDPIVSEVLGVKREQIEGVRNPDENL
VERIDTGENQLRRLAAEFLKSQGQRPVDDATVVPLRVREEIEA