Protein Info for ABZR86_RS01045 in Dyella japonica UNC79MFTsu3.2

Annotation: response regulator transcription factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 transmembrane" amino acids 87 to 106 (20 residues), see Phobius details PF00072: Response_reg" amino acids 11 to 125 (115 residues), 67.4 bits, see alignment E=3e-22 PF08281: Sigma70_r4_2" amino acids 150 to 195 (46 residues), 31 bits, see alignment 4.1e-11 PF04545: Sigma70_r4" amino acids 151 to 195 (45 residues), 24.2 bits, see alignment 4.9e-09 PF00196: GerE" amino acids 153 to 207 (55 residues), 50.3 bits, see alignment E=3.6e-17

Best Hits

Swiss-Prot: 37% identical to RCSB_SALTI: Transcriptional regulatory protein RcsB (rcsB) from Salmonella typhi

KEGG orthology group: K07687, two-component system, NarL family, captular synthesis response regulator RcsB (inferred from 44% identity to pfl:PFL_1107)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2CPL8 at UniProt or InterPro

Protein Sequence (212 amino acids)

>ABZR86_RS01045 response regulator transcription factor (Dyella japonica UNC79MFTsu3.2)
MNITNDANIRIILADDHPIIRRGVMAVLGGSDIRVVGEASCPVELLSLLSRVECDAVVTD
YIMPSDSSPDGIRLIERLRTLRPELPIVVLTMLRNVGLLQALLAAGVKAIVDKSTAMAEI
HTAVRLAATGHVFVSATFEGRLARFGAHSVNRLTEREGEIIRLLVAGMSVTEIARKLDRS
VKTVSKQKTDAMKKLGLRSDMEIYAYATEVGY