Protein Info for ABZR86_RS00630 in Dyella japonica UNC79MFTsu3.2

Annotation: DNA mismatch repair protein MutS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 857 TIGR01070: DNA mismatch repair protein MutS" amino acids 8 to 854 (847 residues), 1144.2 bits, see alignment E=0 PF01624: MutS_I" amino acids 9 to 120 (112 residues), 147.8 bits, see alignment E=3.6e-47 PF05188: MutS_II" amino acids 129 to 254 (126 residues), 110.9 bits, see alignment E=1.6e-35 PF05192: MutS_III" amino acids 271 to 560 (290 residues), 161.9 bits, see alignment E=6.2e-51 PF05190: MutS_IV" amino acids 429 to 520 (92 residues), 105.9 bits, see alignment E=2.7e-34 PF00488: MutS_V" amino acids 611 to 798 (188 residues), 286.2 bits, see alignment E=3.5e-89

Best Hits

Swiss-Prot: 70% identical to MUTS_XANAC: DNA mismatch repair protein MutS (mutS) from Xanthomonas axonopodis pv. citri (strain 306)

KEGG orthology group: K03555, DNA mismatch repair protein MutS (inferred from 71% identity to psu:Psesu_1011)

MetaCyc: 61% identical to DNA mismatch repair protein MutS (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"DNA mismatch repair protein MutS" in subsystem DNA repair, bacterial MutL-MutS system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2CGD4 at UniProt or InterPro

Protein Sequence (857 amino acids)

>ABZR86_RS00630 DNA mismatch repair protein MutS (Dyella japonica UNC79MFTsu3.2)
MTDAHLEHTPLMRQYLTAKAAHPEVLLFFRMGDFYELFYDDARKAARLLDITLTQRGQSA
GQPIPMAGVPYHALENYLAKLVRLGESVAICEQIGDPALAKGIVERKVVRIVTPGTVTDA
ALLEERRDNLLLAIAAGPQASYGLAWVDLGSGRFLLSEVPGAEALAAELARLQPAETLVD
EAVAWPKLVSTLPGLRRRPPWHFDSDAARRELNRFFGTRDLGGFGVDNLPLAIAAAGCLL
GYVEETQKSALPHVSGMAVESAGETIAMDAATRRNLELDTHPSGRTEHTLLGVLDESVTP
MGARLLRRWLNRPLRARDTLRRRHQAIGALLDNRAYENLRERLRGIGDLERILARVALRS
ARPRDLSTLRDGLAAAPLLREEIAALDSPLLHALVERIGDHADNAALLAAAVVPQPPVLQ
RDGGVIADGYDAELDELRRLSTHADQYLVELEEREKAASGIATLKVGYNRVHGYYIEISK
AQSEKAPTHYTRRQTTKNAERYITEELKTFEDKVLSAKERSLMRERALYEALLDTLTERL
EPLKSAAAAMAELDVLATLAERASALDWSQPQLTDEPGLRIERGRHPVVEKVRAEPFEPN
DLKLDDARRMLVITGPNMGGKSTYMRQNALIVLLAHIGSYVPASAAAIGPVDRIFTRIGA
GDDLSRGQSTFMVEMSETANILHNATESSLVLMDEVGRGTSTYDGLALARAAAVHLAASS
RAYTLFATHYFELTELANEYPTIANVHLDAVEYGEQLVFMHAVKEGPANRSFGLQVAALA
GLPKSVIADARRTLAELERGMHQQASAAKLKMDDSPQLGLFAPAEPSAAERALEEVDPDA
LTPREALEVLYRLKALL