Protein Info for ABZR86_RS00605 in Dyella japonica UNC79MFTsu3.2

Annotation: S4 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 PF01479: S4" amino acids 10 to 54 (45 residues), 35 bits, see alignment E=4.8e-13

Best Hits

Swiss-Prot: 50% identical to HSLR_AERSA: Heat shock protein 15 homolog (hslR) from Aeromonas salmonicida

KEGG orthology group: K04762, ribosome-associated heat shock protein Hsp15 (inferred from 53% identity to tkm:TK90_2048)

Predicted SEED Role

"Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)" in subsystem Heat shock dnaK gene cluster extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1I2CFS5 at UniProt or InterPro

Protein Sequence (129 amino acids)

>ABZR86_RS00605 S4 domain-containing protein (Dyella japonica UNC79MFTsu3.2)
MSESSSSAVRADVWLWAARFFKTRSLAKQAIDGGKIAVNDLGCKPAKTLHLGDMLRITRG
EERLQVEVLALSEQRGPAPVAQALYRETEASLAAREATREQRRLTGASGPPRRPDKQERR
ELRRLKDSL